CDS

Accession Number TCMCG057C00979
gbkey CDS
Protein Id XP_018434099.1
Location complement(join(3957278..3957479,3957559..3957849,3957936..3958752,3958822..3960889))
Gene LOC108806449
GeneID 108806449
Organism Raphanus sativus

Protein

Length 1125aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018578597.1
Definition PREDICTED: phytochrome A [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category K
Description Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
KEGG_ko ko:K12120        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04712        [VIEW IN KEGG]
map04712        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004672        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006468        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007602        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009581        [VIEW IN EMBL-EBI]
GO:0009582        [VIEW IN EMBL-EBI]
GO:0009583        [VIEW IN EMBL-EBI]
GO:0009585        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009606        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009629        [VIEW IN EMBL-EBI]
GO:0009630        [VIEW IN EMBL-EBI]
GO:0009637        [VIEW IN EMBL-EBI]
GO:0009638        [VIEW IN EMBL-EBI]
GO:0009639        [VIEW IN EMBL-EBI]
GO:0009640        [VIEW IN EMBL-EBI]
GO:0009642        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009881        [VIEW IN EMBL-EBI]
GO:0009883        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010017        [VIEW IN EMBL-EBI]
GO:0010018        [VIEW IN EMBL-EBI]
GO:0010114        [VIEW IN EMBL-EBI]
GO:0010161        [VIEW IN EMBL-EBI]
GO:0010201        [VIEW IN EMBL-EBI]
GO:0010203        [VIEW IN EMBL-EBI]
GO:0010218        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016301        [VIEW IN EMBL-EBI]
GO:0016310        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016772        [VIEW IN EMBL-EBI]
GO:0016773        [VIEW IN EMBL-EBI]
GO:0017148        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031516        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032269        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034249        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0038023        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042802        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046685        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051606        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055122        [VIEW IN EMBL-EBI]
GO:0060089        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071214        [VIEW IN EMBL-EBI]
GO:0071478        [VIEW IN EMBL-EBI]
GO:0071482        [VIEW IN EMBL-EBI]
GO:0071489        [VIEW IN EMBL-EBI]
GO:0071490        [VIEW IN EMBL-EBI]
GO:0071491        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0104004        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCAGGGTCTAGGCCGAGCCATTCCTCCGAGGGCTCAAGGCGTTCAAGAAACAGCGCTAGGATCATTGCGCAGACCACCGTTGATGCAAAGCTCCATGCTGATTTCGAGGAGTCAGGCAGTTCCTTTGACTACTCAACCTCGGTGCGTGTCACCGGACCCGTTCTGGAAAACCAGCCGCCGAGATCAGACAAGGTGACAACGACTTACCTTCACCACATACAGAAGGGAAAGCTGATTCAGCCTTTCGGTTGTTTGCTCGCCTTGGACGAAAAGACCTTCAAAGTCATCGCGTACAGCGAGAACGCTGCTGAGCTATTGACGATGGCTAGTCACGCAGTTCCTAGTGTTGGCGAACAGGGTGCTCTAGGCATAGGCACAGATATAAGGAGCCTTTTCACCGCTCCTAGCGCCTCTGCTTTGCAGAAAGCGCTTGGATTCGGAGACGTCTCCCTCCTGAACCCCATCCTCGTGCATTGCAAGACATCCGCGAAGCCGTTTTACGCCATCGTGCACAGGGTCACGGGGAGCATCATCGTCGACTTCGAGCCGGTGAAGCCTTACGAAGTTCCCATGACGGCTGCTGGCGCTCTGCAGTCGTACAAACTCGCTGCGAAAGCCATCACTAGGCTGCAGTCTCTCCCCAGCGGGAGCATGGAGAGGCTTTGCGACACGATGGTTCAAGAGGTTTTCGAGCTCACGGGGTATGACAGGGTGATGGCTTATAAGTTTCATGATGATGATCACGGAGAGGTTGTCTCTGAAGTCACGAAGCCTGGACTGGAGCCTTACCTCGGCCTGCACTATCCAGCCACAGACATCCCTCAGGCAGCTCGTTTCCTCTTTATGAAGAACAAGGTCCGGATGATCGTTGATTGCAATGCGAAACACGTTAGGGTGCTTCAAGATGAGAAGCTCTCATTTGAACTCACCTTGTGTGGCTCCACGCTCAGAGCGCCGCACAGCTGTCACTTGCAGTACATGGCCAACATGGACTCGATTGCATCTCTCGTTATGGCGGTTGTGGTAAACGAGGAAGATGGAGAAGGCGATGCTGCTGCTCCTCCTGATTCCACCGCGCCTCAGAAGAGAAAGAGGCTGTGGGGTCTGGTGGTTTGTCACAACACGACTCCGAAGTTTGTTCCGTTTCCTCTCAGGTACGCCTGTGAGTTTCTAGCTCAGGTGTTTGCGATACACGTCAACAAGGAGGTGGAGCTGGAGAATCAGATCGTGGAGAAGAACATTTTACGCACGCAGACTCTCCTGTGCGATATGCTGATGCGTGACGCTCCCCTGGGCATCGTCTCGCAGAGCCCCAACATAATGGACCTTGTGAAATGCGATGGAGCAGCTCTCTTGTACAAAGAGAAAGTATGGAAGCTAGGAATCACTCCGAGTGAGTTCCATCTTCAGGAGATAGCGTCGTGGCTGTGCGAGTATCACACGGATTCAACTGGTCTGAGCACTGATAGCTTGCACGACGCCGGGTTTCCCAGAGCACTAGCTCTGGGAGACTCGGTGTGTGGAATGGCGGCTGTGAGGATATCATCTAAAGACATGATATTCTGGTTCCGTTCACACACCGCCGGGGAAGTGAGATGGGGAGGTGCAAAGCATGATCCAGATGATAGGGATGACGCGAGGAGAATGCACCCGAGGTCATCTTTCAAGGCTTTCCTCGAAGTGGTCAAGACGAGGAGTTTGCCTTGGAAGGACTATGAGATGGATGCCATACACTCCTTGCAGCTTATTCTGAGGAATGCTTTCAAGGATGGTGGCGAAACTGCTGATGTGAATACAAAGATCATCCACTCGAAGCTGAATGATTTAAAAATCGATGGTATACAAGAACTTGAAGCTGTTACGAGCGAGATGGTTCGTTTGATCGAGACTGCTACTGTGCCGATATTGGCGGTTGATTCTGATGGATTGGTTAACGGTTGGAACACGAAAATTGCCGAGCTGACTGGTCTTCCGGTTGATGAAGCCATAGGGAAGCATCTCCTCACGCTTGTTGAGGATTCTTCAGTGGAGATCGTTAAGAGGATGTTGGAGAATGCATTACAAGGAACCGAGGAGCAGAATGTTCAATTTGAGATCAAGACACATCTGTCAAGGGCTGATGCTGGACCTATAAGTTTAGTTGTTAACGCATGCGCTAGTAGAGATCTCCGTGAGAACGTTGTTGGGGTGTGCTTTGTAGCTCATGACCTCACTGGACAGAAGACTGTGATGGACAAGTTCACTCGGATAGAAGGTGATTACAAGGCGATCGTCCAGAATCCAAACCCGCTGATCCCTCCCATATTTGGTACCGACGAGTTCGGTTGGTGCACGGAGTGGAATCCAGCGATGTCAAAGTTAACCGGTTTGAAGCGAGAGGAAGTGATGGACAAGATGCTGTTAGGAGAAGTCTTCGGGACTCAGAAGTCGTGTTGTCGTCTGAAGAATCAAGAAGCGTTTGTGAACCTTGGGATCGTGCTGAACAACGCTGTGACGAGTCAGGAGGCGGAGAAAGTGCCCTTTGCTTTCTTCACGAGAGGTGGAAAGCATGTGGAGTGTCTGTTGTGTGTGAGTAAGAAACTGGACAGGGAAGGTGTGGTGACAGGGGTCTTCTGTTTCCTGCAGCTCGCTAGCCATGAGCTGCAGCAGGCCTTGCATGTTCAGCGTCTAGCTGAGAGGACTGCGTTGAAGAGGTTAAAGGCTCTAGCTTACATAAAAAGACAGATCAGGAATCCGTTATCCGGTATCATGTTTACAAGGAAAATGATGGAGGGGTCTGAGTTAGGACCGGAGCAGAGAAGGATTCTGCAGACTAGCGCTTTATGTCAGAAGCAACTCAGCAAGATCCTGGATGATTCTGATCTGGAAAGCATCATTGAAGGGTGCTTGGATCTGGAAATGAAAGAGTTCAGCTTGAATGAAGTGTTGACTGCTTCCACAAGTCAAGTAATGATGAAGAGTAACGGAAAGAGCGTTAGGATAACAAATGATACAGGAGAAGAAGTGATGTCTGATACTTTGTATGGAGACAGTATCAGGCTTCAACAAGTCTTGGCAGATTTCATGCTCATGTCTGTTAACTTTACACCGTCCGGAGGAGAGCTAACTGTCACAGCTTCCTTGAGGAAAGATCAGCTCGGGAGATCTGTGCATCTTGCTTATTTAGAGATCAGAATAACGCATACAGGAGCTGGGCTACCAGAGTTTTTGCTGAACCAAATGTTTGGAACTGAGGAAGATGTGTCGGAGGAAGGACTAAGCTTGATGGTTAGCCGGAAACTAGTGAAGCTGATGAATGGAGATGTTCAGTACTTGAGACAAGCTGGGAAATCGAGTTTTATTATCACTGCAGAACTCGCTGCAGCAAACAAGTAG
Protein:  
MSGSRPSHSSEGSRRSRNSARIIAQTTVDAKLHADFEESGSSFDYSTSVRVTGPVLENQPPRSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAAELLTMASHAVPSVGEQGALGIGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSAKPFYAIVHRVTGSIIVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRVLQDEKLSFELTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAAAPPDSTAPQKRKRLWGLVVCHNTTPKFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKEKVWKLGITPSEFHLQEIASWLCEYHTDSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGGETADVNTKIIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAIGKHLLTLVEDSSVEIVKRMLENALQGTEEQNVQFEIKTHLSRADAGPISLVVNACASRDLRENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCTEWNPAMSKLTGLKREEVMDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQEAEKVPFAFFTRGGKHVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRLKALAYIKRQIRNPLSGIMFTRKMMEGSELGPEQRRILQTSALCQKQLSKILDDSDLESIIEGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNDTGEEVMSDTLYGDSIRLQQVLADFMLMSVNFTPSGGELTVTASLRKDQLGRSVHLAYLEIRITHTGAGLPEFLLNQMFGTEEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAELAAANK